Exploring Hi-C contact maps

Valuable alternative to JuiceBox to visualize and explore Hi-C contact maps are HiGlass and Cooler. Check them out here

HiGlass




This is a nice video tutorial to HiGlass given at SciPy.

Go to HiGlass

Cooler


Cooler - Exploring Hi-C in Python
Follow this tutorial to get started with Cooler.