Tutorials


Coding Tutorials

Here we have selected multiple tutorials introducing you to popular scripting languages such as R, Python, and BASH.

Posted by Franck Raynaud, Juan Diaz Myar KeepScienceGoing on April 7th, 2020

Introduction to single cell RNA-seq data analysis

In these tutorials, I will go through single cell RNA-seq data processing and analysis, from raw reads to dimensionality reduction and cell type annotation. A Jupyter notebook is also available to re-do all the steps!

Posted by Arvind Iyer KeepScienceGoing on May 6th, 2020

Introduction to RNA-seq data analysis

In these tutorials, I will go through fundamental steps of RNA-seq data analysis including reads alignment, mRNA expression quantification, and differential expression analysis. In addition, I provide scripts to performs these analyses.

Posted by Daniele Tavernari KeepScienceGoing on April 14th, 2020

Introduction to gene set enrichment analysis

In these tutorials, I will present you three different strategies to do gene set enrichment analysis. All examples are accompanied by supporting R code.

Posted by Sadegh Saghafinia KeepScienceGoing on April 14th, 2020

Introduction to cBioPortal

In this short tutorial, I will go through the main functionalities of the cBioPortal and show you how you can use this tool to explore, retrieve, and analyze cancer genomics data.
UPDATE: the cBioPortal team is launching a 5 days tutorial series happening every Thursday starting April 30th at 11AM (EST).

Posted by Giovanni Ciriello KeepScienceGoing on April 1st, 2020

Exploring Hi-C contact maps: JuiceBox

In this short tutorial, I will go through the main functionalities of JuiceBox to visualize and analize Hi-C contact maps.

Posted by Luca Nanni KeepScienceGoing on April 7th, 2020

Exploring Hi-C contact maps: HiGlass and Cooler

Here, I selected a few tutorial to HiGlass and Cooler, computational approaches to visualize and explore Hi-C maps.

Posted by Luca Nanni KeepScienceGoing on April 7th, 2020

Online training in Bioinformatics and Biostatistics

Great collection of lectures on a wide variety of bioinformatics topics by David Tabb. Great resource!

Posts by David Tabb, Vanderbilt University