scRNA-seq Analysis

In this not-so-short tutorial, I will guide you through how to process and analyze single cell RNA-sequencing (scRNAseq) data.

This tutorial can be watched in two parts:
1) data pre-processing, from raw reads to normalized count data,
2) data analysis, including dimensionality reduction, clustering, cell type annotation and differential expression.

Please check the additional links below to the Jupiter notebook specifically created for the analyses presented in the video.
Enjoy!

Additional Links

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GitHub rep and Jupiter notebook here
Tutorial slides